Publications and presentations citing W&M HPC resources, 2010-2014

2014

C. Miller and M. Hinders. Classification of flaw severity using pattern recognition for guided wave-based structural health monitoring. Ultrasonics, 54(1), doi:10.1016/j.ultras.2013.04.020, Jan. 2014, pp. 247-258.
M. Rodriguez-Vega, J. Fischer, S. Das Sarma, and E. Rossi. Ground state of graphene heterostructures in the presence of random charged impurities. Phys. Rev. B 90, 035406
T. A. Byrd and J. B. Delos. Topological analysis of chaotic transport through a ballistic atom pump. Phys. Rev. E 89, 022907 (2014).
M. Mohr, B. Vergales, H. Lee, M. Clark, D. Lake, A. Mennen, J. Kattwinkel, R. Sinkin, J. R. Moorman, K. Fairchild, J. Delos. Very Long Apnea Events in Preterm Infants. Journal of Applied Physiology, doi: 10.1152/japplphysiol.00144.2014, Dec. 2014.
Moriarty, J.M., C.K. Harris, and M. G. Hadfield. A hydrodynamic and sediment transport model for the Waipaoa Shelf, New Zealand: Sensitivity of fluxes to spatially-varying erodibility and model nesting. Journal of Marine Science and Engineering, 2 (2): 336-369. doi:10.3390/jmse20203
Zhang, Y., Ateljevich, E., Yu, H-S., Wu, C-H., and Yu, J.C.S. (2015) A new vertical coordinate system for a 3D unstructured-grid model, Ocean Modelling, 85, 16-31.
Pein, J.U., Stanev, E.V., and Zhang. Y. (2014) The tidal asymmetries and residual flows in Ems Estuary, Ocean Dynamics, 64, 1719-41.
Priest, G.R., Zhang, Y., Witter, R.C., Wang, K., Goldfinger, C. and Stimeley, L. (2014) Tsunami impact to Washington and northern Oregon from segment ruptures on the southern Cascadia subduction zone, Natural Hazards, 72(2), 849-870.
Bellsky, T., J. Berwald, L. Mitchell, 2014: Nonglobal parameter estimation using local ensemble Kalman filtering. Mon. Wea. Rev., 142, 2150–2164. do: http://dx.doi.org\
/10.1175/MWR-D-13-00200.1

2013

C. Miller. Intelligent feature selection for pattern classification of time-domain signals. Ph.D. dissertation, William & Mary, 2013.
H. Wang, D. Loftis, D. Forrest, A. Roland, and J. Zhang. Large scale storm tide and super-high resolution local inundation modeling for hurricane Sandy. Presentation, North Atlantic Coast Comprehensive Study, Brooklyn, NY, June 12-13, 2013.
Y. J. Zhang. Numerical Tsunami Simulations for Clatsop County, Oregon. Final report to the Oregon Department of Geology and Mineral Industries, June 2013.
M.A. Mohr, M. Patel, H. Lee, M.T. Clark, D. Lake, B. Vergales, J. Kattwinkel, J.R. Moorman, K. Fairchild, and J.B. Delos. Automated Detection and Characterization of Periodic Breathing in Preterm Infants. Podium presentation, 12th International Conference on Complex Acute Illness, Budapest, Hungary, August 8-11, 2013.

2012

C. Bertoncini, K. Rudd, B. Nousain, and M. Hinders. Wavelet fingerprinting of radio-frequency identification (RFID) tags. IEEE Transactions on Industrial Electronics, 59(12), doi:10.1109/TIE.2011.2179276, Dec. 2012, pp. 4843–4850.
B. Hong and J. Shen. Responses of estuarine salinity and transport processes to potential future sea-level rise in the Chesapeake Bay. Estuarine, Coastal and Shelf Science, Vol. 104-105, doi:10.1016/j.ecss.2012.03.014, June 2012, pp. 33-45.
C. Leckey, M. Rogge, C. Miller, and M. Hinders. Multiple-mode Lamb-wave scattering simulations using 3D elastodynamic finite integration technique. Ultrasonics, 52(2), doi:10.1016/j.ultras.2011.08.003, Feb. 2012, pp. 193-207.
Y. Luo, H. Ducklow, M. Friedrichs, M. Church, D. Karl, and S. Doney. Interannual variability of primary production and dissolved organic nitrogen storage in the North Pacific Subtropical Gyre. Journal of Geophysical Research-Biogeosciences, Vol. 117, G03019, doi:10.1029/2011JG001830, Aug. 2012.
M. Mohr, E. Hoggan, H. Lee, D. Lake, B. Vergales, R. Sinkin, A. O. Paget-Brown, M. T. Clark, K. Fairchild, J. Kattwinkel, J. R. Moorman, and J. B. Delos. Extremely long apneas in neonates. Poster presentation, 11th International Conference on Complexity in Acute Illness, Ottawa, Sept. 6–9, 2012.
K. Rice, B. Hong, and J. Shen. Assessment of salinity intrusion in the James and Chickahominy Rivers as a result of simulated sea-level rise in Chesapeake Bay, East Coast, USA. Journal of Environmental Management, Vol. 111, doi:10.1016/j.jenvman.2012.06.036, Nov. 2012, pp. 61-69.
J. Shen, B. Hong, L. Schugam, Y. Zhao, and J. White. Modeling of polychlorinated biphenyls (PCBs) in the Baltimore Harbor. Ecological Modeling, Vol. 242, doi:10.1016/j.ecolmodel.2012.05.025, Sep. 2012, pp. 54-68.
C. Triola and E. Rossi. Screening and collective modes in gapped bilayer graphene. Physical Review B, 86(16), 161408(R), doi:10.1103/PhysRevB.86.161408, Oct. 2012.
R. Zhang and R. Kincaid. Robust optimization for runway configuration management. Submitted to International Journal of Operations Research and Information Systems, Dec. 2011.

2011

A. Carpenter, L. Leemis, A. Papir, D. Phillips and G. Phillips. Managing magnetic resonance imaging machines: support tools for scheduling and planning. Health Care Management Science, 14(2), doi:10.1007/s10729-011-9153-z, Jun. 2011, pp. 158-173.
B. Holman. Topological characterization of extinction in a coupled Ricker patch model. Honors thesis, Department of Mathematics, William & Mary, hdl:10288/13699, May 2011.
T. Horrom, S. Balik, A. Lezama, M. Havey and E. Mikhailov. Polarization self-rotation in ultracold atomic ⁸⁷Rb. Physical Review A, 83(5):053850, doi:10.1103/PhysRevA.83.053850, May 2011.
T. Horrom, A. Lezama, S. Balik, M. Havey and E. Mikhailov. Quadrature noise in light propagating through a cold ⁸⁷Rb atomic gas. Journal of Modern Optics, 58(21), doi:10.1080/09500340.2011.594181, Dec. 2011.
G. Iyengar, D. Phillips and C. Stein. Approximating semidefinite packing programs. SIAM Journal on Optimization, 21(1), doi:10.1137/090762671, Jan. 2011, pp. 231–268.
R. Kincaid and R. Zhang. Robust optimization model for runway configuration management. Proceedings of the 11th AIAA Aviation Technology, Integration, and Operations (ATIO) Conference, AIAA 2011-6922, Sept. 2011.
C. Leckey. Investigation of ultrasonic wave scattering effects using computational methods. Ph.D. dissertation, William & Mary, 2011.
C. Leckey and M. Hinders. Viscous effects in the acoustic manipulation of algae for biofuel production. Journal of Applied Phycology, doi:10.1007/s10811-011-9662-7, March 2011.
C. Leckey and M. Hinders. 3D modeling of ultrasonic wave interaction with disbonds and weak bonds. Review of Progress in Quantitative Nondestructive Evaluation, Vol. 31 (AIP Conference Proceedings Vol. 1430), doi:10.1063/1.4716220, Burlington, VT, July 2011, pp. 111-117.
C. Leckey and M. Hinders. Newtonian viscous effects in ultrasonic emboli removal from blood. Ultrasound in Medicine and Biology, 37(8), doi:10.1016/j.ultrasmedbio.2011.05.009, Aug. 2011, pp. 1340-1349.
Q. Li, E. Hwang, E. Rossi and S. Das Sarma. Theory of 2d transport in graphene for correlated disorder. Physical Review Letters, 107(15), doi:10.1103/PhysRevLett.107.156601, Oct. 2011.
C. Miller and M. Hinders. Flaw detection and characterization using Lamb wave tomography and pattern classification. Review of Progress in Quantitative Nondestructive Evaluation, Vol. 31 (AIP Conference Proceedings Vol. 1430), doi:10.1063/1.4716290, Burlington, VT, July 2011, pp. 663-670.
E. Rossi and S. Das Sarma. Inhomogenous electronic structure, transport gap, and percolation threshold in disordered bilayer graphene. Physical Review Letters, 107(15), doi:10.1103/PhysRevLett.107.155502, Oct. 2011.
K. Xu, C. Harris, R. Hetland and J. Kaihatu. Dispersal of Mississippi and Atchafalaya sediment on the Texas-Louisiana shelf: model estimates for the year 1993. Continental Shelf Research, 31(15), doi:10.1016/j.csr.2011.05.008, Oct. 2011, pp. 1558-1575.

2010

A. Bever. Integrating space- and time-scales of sediment-transport for Poverty Bay, New Zealand. Ph.D. dissertation, Virginia Institute of Marine Science, William & Mary, 2010.
J. Bingham and M. Hinders. 3D elastodynamic finite integration technique simulation of guided waves in extended built-up structures containing flaws. Journal of Computational Acoustics, 18(2), doi:10.1142/S0218396X10004097, June 2010, 165–192.
C. Campbell and M. Hinders. Ultrasonic radiation force for emboli removal from blood. Review of Progress in Quantitative Nondestructive Evaluation, Vol. 29 (AIP Conference Proceedings Vol. 1211), Kingston, RI, July 2009, 1551–1558.
C. Chang and S. Zhang. Spin and charge order in the doped Hubbard model: long-wavelength collective modes. Physical Review Letters, 104(11), doi:10.1103/PhysRevLett.104.116402, Mar. 2010.
C. Chang, S. Zhang and D. Ceperley. Itinerant ferromagnetism in a Fermi gas with contact interaction: magnetic properties in a dilute Hubbard model. Physical Review A, 82(6), doi:10.1103/PhysRevA.82.061603, Dec. 2010.
M. Duarte, C. Weld and R. Kincaid. A Runway Configuration Management (RCM) model with marginally decreasing transition capacities. Proceedings 2010 IEEE Systems and Information Engineering Design Symposium, University of Virginia, doi:10.1109/SIEDS.2010.5469669, Apr. 2010.
J. Hartman, E. Sobie and G. Smith. Spontaneous Ca²⁺ sparks and Ca²⁺ homeostasis in a minimal model of permeabilized ventricular myocytes. American Journal of Physiology: Heart and Circulatory Physiology, 299(6), doi:10.1152/ajpheart.00293.2010, Dec. 2010.
B. Hong and J. Shen. Modeling study of salinity change under different sea-level rise scenarios in the Chesapeake Bay. 2010 Ocean Sciences Meeting, Portland, OR, Feb. 2010.
B. Hong, N. Panday, J. Shen, H. Wang, W. Gong and A. Soehl. Modeling water exchange between Baltimore Harbor and Chesapeake Bay using artificial tracers: seasonal variations. Marine Environmental Research, 70(1), doi:10.1016/j.marenvres.2010.03.010, July 2010, 102–119.
M. Huertas, G. Smith and S. Györke. Ca²⁺ alternans in a cardiac myocyte model that uses moment equations to represent heterogeneous junctional SR Ca²⁺. Biophysical Journal, 99(2), doi:10.1016/j.bpj.2010.04.032, July 2010, 377–387.
M. D. LaMar and G. D. Smith. Effect of node-degree correlation on synchronization of identical pulse-coupled oscillators. Physical Review E, 84(4):045206, doi:10.1103/PhysRevE.81.046206, Apr. 2010.
Y. Luo. A data assimilating model of the microbial ecosystem in the open ocean. Ph.D. dissertation, Brown University, 2010.
Y. Luo, M. Friedrichs, S. Doney, M. Church and H. Ducklow. Oceanic heterotrophic bacterial nutrition by semilabile DOM as revealed by data assimilative modeling. Aquatic Microbial Ecology, 60(3), doi:10.3354/ame01427, Aug. 2010, 273–287.
C. Weld, R. Kincaid and M. Duarte. A runway configuration management model with marginally decreasing transition capacities. Advances in Operations Research, 2010:436765, doi:10.1155/2010/436765, Nov. 2010.
G. Williams, G. Smith, E. Sobie and M. Jafri. Models of cardiac excitation-contraction coupling in ventricular myocytes. Mathematical Biosciences, 226(1), doi:10.1016/j.mbs.2010.03.005, July 2010‚ pp. 1–15.
H. Xu, K. Zhang and J. Shen. Simulation of storm surge along the US East Coast using a multi-scale model. 2010 Ocean Sciences Meeting, Portland, OR, Feb. 2010.